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1

Discovering new invertebrate neuropeptides using mass spectrometry

Amanda B. Hummon, Andinet Amare, Jonathan V. Sweedler

Journal:

Mass Spectrometry Reviews

Year:

2006

Language:

english

File:

PDF, 636 KB

english, 2006

2

Chemometric analysis of MALDI mass spectrometric images of three-dimensional cell culture systems

Weaver, Eric M., Hummon, Amanda B., Keithley, Richard B.

Journal:

Analytical Methods

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

3

Proteomic Challenges: Sample Preparation Techniques for Microgram-Quantity Protein Analysis from Biological Samples

Feist, Peter, Hummon, Amanda

Journal:

International Journal of Molecular Sciences

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

4

Phosphoproteomics of colon cancer metastasis: comparative mass spectrometric analysis of the isogenic primary and metastatic cell lines SW480 and SW620

Schunter, Alissa J., Yue, Xiaoshan, Hummon, Amanda B.

Journal:

Analytical and Bioanalytical Chemistry

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

5

Electronic Cigarettes and the Lung Proteome

Shields, Peter G, Song, Min-Ae, Freudenheim, Jo L, Brasky, Theodore M, Mathe, Ewy, McElroy, Joseph P, Hummon, Amanda B, Wewers, Mark D

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2018

Language:

english

File:

PDF, 77 KB

english, 2018

6

Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer

Jordi Camps, Quang Tri Nguyen, Hesed M. Padilla-Nash, Turid Knutsen, Nicole E. McNeil, Danny Wangsa, Amanda B. Hummon, Marian Grade, Thomas Ried, Michael J. Difilippantonio

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 494 KB

english, 2009

7

A genomic strategy for the functional validation of colorectal cancer genes identifies potential therapeutic targets

Marian Grade, Amanda B. Hummon, Jordi Camps, Georg Emons, Melanie Spitzner, Jochen Gaedcke, Patrick Hoermann, Reinhard Ebner, Heinz Becker, Michael J. Difilippantonio, B. Michael Ghadimi, Tim Beissbar

Journal:

International Journal of Cancer

Year:

2011

Language:

english

File:

PDF, 751 KB

english, 2011

8

Discovering new neuropeptides using single-cell mass spectrometry

Amanda B. Hummon, Jonathan V. Sweedler, Rebecca W. Corbin

Journal:

TrAC Trends in Analytical Chemistry

Year:

2003

Language:

english

File:

PDF, 290 KB

english, 2003

9

A novel prohormone processing site in Aplysia californica: the Leu–Leu rule

Amanda B. Hummon, He-Qing Huang, Wayne P. Kelley, Jonathan V. Sweedler

Journal:

Journal of Neurochemistry

Year:

2002

Language:

english

File:

PDF, 523 KB

english, 2002

10

Systems-wide RNAi analysis ofCASP8AP2/FLASHshows transcriptional deregulation of the replication-dependent histone genes and extensive effects on the transcriptome of colorectal cancer cells

Amanda B Hummon, Jason J Pitt, Jordi Camps, Georg Emons, Susan B Skube, Konrad Huppi, Tamara L Jones, Tim Beissbarth, Frank Kramer, Marian Grade, Michael J Difilippantonio, Thomas Ried, Natasha J Capl

Journal:

Molecular Cancer

Year:

2012

Language:

english

File:

PDF, 467 KB

english, 2012

11

Right-side and left-side colon cancer follow different pathways to relapse

Kerry M. Bauer, Amanda B. Hummon, Steven Buechler

Journal:

Molecular Carcinogenesis

Year:

2012

Language:

english

File:

PDF, 320 KB

english, 2012

12

Comparative label-free LC-MS/MS analysis of colorectal adenocarcinoma and metastatic cells treated with 5-fluorouracil

Kerry M. Bauer, Paul A. Lambert, Amanda B. Hummon

Journal:

Year:

2012

Language:

english

File:

PDF, 671 KB

english, 2012

13

Mass spectrometry-based phosphoproteomics in cancer research

Xiao-Shan Yue, Amanda B. Hummon

Journal:

Frontiers in Biology

Year:

2012

Language:

english

File:

PDF, 509 KB

english, 2012

14

Imaging Mass Spectrometry of Three-Dimensional Cell Culture Systems

Li, Haohang, Hummon, Amanda B.

Journal:

Analytical Chemistry

Year:

2011

Language:

english

File:

PDF, 4.33 MB

english, 2011

15

Imaging mass spectrometry: From tissue sections to cell cultures

Weaver, Eric M., Hummon, Amanda B.

Journal:

Advanced Drug Delivery Reviews

Year:

2013

Language:

english

File:

PDF, 2.01 MB

english, 2013

16

Evaluation of Therapeutics in Three-Dimensional Cell Culture Systems by MALDI Imaging Mass Spectrometry

Liu, Xin, Weaver, Eric M., Hummon, Amanda B.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 16.33 MB

english, 2013

17

Comparison of bottom-up proteomic approaches for LC-MS analysis of complex proteomes

Weston, Leigh A., Bauer, Kerry M., Hummon, Amanda B.

Journal:

Analytical Methods

Year:

2013

Language:

english

File:

PDF, 441 KB

english, 2013

18

Single Cell Metabolic Profiling of Tumor Mimics

Keithley, Richard B., Weaver, Eric M., Rosado, Andrea M., Metzinger, Mark P., Hummon, Amanda B., Dovichi, Norman J.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 573 KB

english, 2013

19

Combination of Multistep IMAC Enrichment with High-pH Reverse Phase Separation for In-Depth Phosphoproteomic Profiling

Yue, Xiao-Shan, Hummon, Amanda B.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.81 MB

english, 2013

20

Peer Reviewed: The Chemistry of Thought: Neurotransmitters in the Brain

Stuart, Jeffrey N., Hummon, Amanda B., Sweedler, Jonathan V.

Journal:

Analytical Chemistry

Year:

2004

Language:

english

File:

PDF, 260 KB

english, 2004

21

From Precursor to Final Peptides: A Statistical Sequence-Based Approach to Predicting Prohormone Processing

Hummon, Amanda B., Hummon, Norman P., Corbin, Rebecca W., Li, Lingjun, Vilim, Ferdinand S., Weiss, Klaudiusz R., Sweedler, Jonathan V.

Journal:

Journal of Proteome Research

Year:

2003

Language:

english

File:

PDF, 82 KB

english, 2003

22

Selective, Bead-Based Global Peptide Capture Using a Bifunctional Cross-Linker

Weston, Leigh A., Bauer, Kerry M., Skube, Susan B., Hummon, Amanda B.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 1.29 MB

english, 2013

23

Effects of the miR-143/-145 MicroRNA Cluster on the Colon Cancer Proteome and Transcriptome

Bauer, Kerry M., Hummon, Amanda B.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.94 MB

english, 2012

24

Bridging Neuropeptidomics and Genomics with Bioinformatics: Prediction of Mammalian Neuropeptide Prohormone Processing

Amare, Andinet, Hummon, Amanda B., Southey, Bruce R., Zimmerman, Tyler A., Rodriguez-Zas, Sandra L., Sweedler, Jonathan V.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 96 KB

english, 2006

25

Comparative LC-MS/MS analysis of optimal cutting temperature (OCT) compound removal for the study of mammalian proteomes

Weston, Leigh A., Hummon, Amanda B.

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2013

Language:

english

File:

PDF, 315 KB

english, 2013

26

Correlated mass spectrometry imaging and confocal Raman microscopy for studies of three-dimensional cell culture sections

Ahlf, Dorothy R., Masyuko, Rachel N., Hummon, Amanda B., Bohn, Paul W.

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2014

Language:

english

File:

PDF, 543 KB

english, 2014

27

Proteomic and Functional Investigation of the Colon Cancer Relapse-Associated Genes NOX4 and ITGA3

Bauer, Kerry M., Watts, Tanya N., Buechler, Steven, Hummon, Amanda B.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.73 MB

english, 2014

28

Quantitative Determination of Irinotecan and the Metabolite SN-38 by Nanoflow Liquid Chromatography-Tandem Mass Spectrometry in Different Regions of Multicellular Tumor Spheroids

Liu, Xin, Hummon, Amanda B.

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2015

Language:

english

File:

PDF, 1.68 MB

english, 2015

29

Mass Spectrometry Imaging of Therapeutics from Animal Models to Three-Dimensional Cell Cultures

Liu, Xin, Hummon, Amanda B.

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 21.83 MB

english, 2015

30

Comparing Multistep Immobilized Metal Affinity Chromatography and Multistep TiO 2 Methods for Phosphopeptide Enrichment

Yue, Xiaoshan, Schunter, Alissa, Hummon, Amanda B.

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

31

Over 2300 Phosphorylated Peptide Identifications with Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry in a 100 min Separation

Ludwig, Katelyn R., Sun, Liangliang, Zhu, Guijie, Dovichi, Norman J., Hummon, Amanda B.

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

32

Evaluation of the mirn23a Cluster through an iTRAQ-based Quantitative Proteomic Approach

Ludwig, Katelyn R, Dahl, Richard, Hummon, Amanda B

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

33

Drug penetration and metabolism in 3D cell cultures treated in a 3D printed fluidic device: assessment of irinotecan via MALDI imaging mass spectrometry

LaBonia, Gabriel J., Lockwood, Sarah Y., Heller, Andrew A., Spence, Dana M., Hummon, Amanda B.

Journal:

Year:

2016

Language:

english

File:

PDF, 637 KB

english, 2016

34

Bottom-up proteomic analysis of single HCT 116 colon carcinoma multicellular spheroids

Feist, Peter E., Sun, Liangliang, Liu, Xin, Dovichi, Norman J., Hummon, Amanda B.

Journal:

Rapid Communications in Mass Spectrometry

Year:

2015

Language:

english

File:

PDF, 537 KB

english, 2015

35

Quantitative Proteomic and Phosphoproteomic Comparison of 2D and 3D Colon Cancer Cell Culture Models

Yue, Xiaoshan, Lukowski, Jessica K, Weaver, Eric M, Skube, Susan B, Hummon, Amanda B

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 24.59 MB

english, 2016

36

Nutrient Restriction of Glucose or Serum Results in Similar Proteomic Expression Changes in 3D Colon Cancer Cell Cultures

Schroll, Monica M., Liu, Xin, Herzog, Sarah K., Skube, Susan B., Hummon, Amanda B.

Journal:

Nutrition Research

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

37

Chemical Imaging of Platinum-Based Drugs and their Metabolites

Liu, Xin, Hummon, Amanda B.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.37 MB

english, 2016

38

Isolation and solubilization of proteins after TRIzol® extraction of RNA and DNA from patient material following prolonged storage

Hummon, Amanda, Lim, Sharlene, Difilippantonio, Michael, Ried, Thomas

Journal:

Year:

2007

Language:

english

File:

PDF, 359 KB

english, 2007

39

Sample Preparation Strategies for Mass Spectrometry Imaging of 3D Cell Culture Models

Ahlf Wheatcraft, Dorothy R., Liu, Xin, Hummon, Amanda B.

Journal:

Journal of Visualized Experiments

Year:

2014

Language:

english

File:

PDF, 282 KB

english, 2014

40

Multicellular Tumor Spheroids Combined with Mass Spectrometric Histone Analysis To Evaluate Epigenetic Drugs

Feist, Peter E., Sidoli, Simone, Liu, Xin, Schroll, Monica M., Rahmy, Sharif, Fujiwara, Rina, Garcia, Benjamin A., Hummon, Amanda B.

Journal:

Analytical Chemistry

Year:

2017

Language:

english

File:

PDF, 1.24 MB

english, 2017

41

Mass spectrometry for the discovery of biomarkers of sepsis

Ludwig, Katelyn R., Hummon, Amanda B.

Journal:

Molecular BioSystems

Year:

2017

Language:

english

File:

PDF, 2.30 MB

english, 2017

42

Glucose Restriction Combined with Autophagy Inhibition and Chemotherapy in HCT 116 Spheroids Decreases Cell Clonogenicity and Viability Regulated by Tumor Suppressor Genes

Schroll, Monica M., LaBonia, Gabriel J., Ludwig, Katelyn R., Hummon, Amanda B.

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 1.37 MB

english, 2017

43

Assessing chemotherapeutic effectiveness using a paper-based tumor model

Boyce, Matthew W., LaBonia, Gabriel J., Hummon, Amanda B., Lockett, Matthew R.

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2017

Language:

english

File:

PDF, 2.15 MB

english, 2017

44

Analyzing Liposomal Drug Delivery Systems in Three-Dimensional Cell Culture Models Using MALDI Imaging Mass Spectrometry

Lukowski, Jessica K., Weaver, Eric M., Hummon, Amanda B

Journal:

Analytical Chemistry

Year:

2017

Language:

english

File:

PDF, 526 KB

english, 2017

45

Discovery of leucokinin-like neuropeptides that modulate a specific parameter of feeding motor programs in the molluscan model, Aplysia

Zhang, Guo, Vilim, Ferdinand S, Liu, Dan-Dan, Romanova, Elena V, Yu, Ke, Yuan, Wang-Ding, Xiao, Hui, Hummon, Amanda B, Chen, Ting-Ting, Alexeeva, Vera, Yin, Si-Yuan, Chen, Song-An, Cropper, Elizabeth

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 2.20 MB

english, 2017

46

Magnetic Bead-Based Peptide Extraction Methodology for Tissue Imaging

Andrews, William T, Skube, Susan B, Hummon, Amanda

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

47

Chemical Analysis of Morphological Changes in Lysophosphatidic Acid-Treated Ovarian Cancer Cells

Bailey, Karen A., Klymenko, Yuliya, Feist, Peter E., Hummon, Amanda B., Stack, M. Sharon, Schultz, Zachary D.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 7.69 MB

english, 2017

48

MALDI Mass Spectrometry Imaging for Evaluation of Therapeutics in Colorectal Tumor Organoids

Liu, Xin, Flinders, Colin, Mumenthaler, Shannon M., Hummon, Amanda B.

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2017

Language:

english

File:

PDF, 3.97 MB

english, 2017

49

iTRAQ Quantitative Proteomic Profiling and MALDI-MSI of Colon Cancer Spheroids Treated with Combination Chemotherapies in a 3D Printed Fluidic Device

LaBonia, Gabriel J, Ludwig, Katelyn R, Mousseau, C. Bruce, Hummon, Amanda B

Journal:

Analytical Chemistry

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

50

Quantitative proteomic analysis of murine white adipose tissue for peritoneal cancer metastasis

Feist, Peter E., Loughran, Elizabeth A., Stack, M. Sharon, Hummon, Amanda B.

Journal:

Analytical and Bioanalytical Chemistry

Year:

2017

Language:

english

File:

PDF, 2.01 MB

english, 2017